IL_8BN3_226

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_226 not in the Motif Atlas

Geometric match to IL_4V88_472

Geometric discrepancy: 0.1025

The information below is about IL_4V88_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BN3|1|2|G|1659
8BN3|1|2|G|1660
8BN3|1|2|C|1661
*
8BN3|1|2|G|1714
8BN3|1|2|A|1715
8BN3|1|2|C|1716

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N4

RPL24A isoform 1

Chain S6

Small ribosomal subunit protein eS6A

Chain S8

40S ribosomal protein S8