IL_8BN3_227

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_227 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.1314

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8BN3|1|2|C|1662
8BN3|1|2|U|1663
8BN3|1|2|C|1664
8BN3|1|2|A|1665
*
8BN3|1|2|U|1710
8BN3|1|2|U|1711
8BN3|1|2|U|1712
8BN3|1|2|G|1713

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain N4

RPL24A isoform 1

Chain S6

Small ribosomal subunit protein eS6A

Chain S8

40S ribosomal protein S8