IL_8BN3_228

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_228 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1234

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8BN3|1|2|A|1665
8BN3|1|2|G|1666
8BN3|1|2|G|1667
8BN3|1|2|A|1668
8BN3|1|2|U|1669
*
8BN3|1|2|A|1706
8BN3|1|2|G|1707
8BN3|1|2|A|1708
8BN3|1|2|A|1709
8BN3|1|2|U|1710

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N4

RPL24A isoform 1

Chain S6

Small ribosomal subunit protein eS6A

Chain S8

40S ribosomal protein S8