3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AGUG*CAU
Length
7 nucleotides
Bulged bases
8BN3|1|3|U|86
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_235 not in the Motif Atlas
Homologous match to IL_8C3A_149
Geometric discrepancy: 0.0643
The information below is about IL_8C3A_149
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_10289.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
237

Unit IDs

8BN3|1|3|A|84
8BN3|1|3|G|85
8BN3|1|3|U|86
8BN3|1|3|G|87
*
8BN3|1|3|C|94
8BN3|1|3|A|95
8BN3|1|3|U|96

Current chains

Chain 3
5S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain L7
60S ribosomal protein L7-A
Chain M0
RPL10 isoform 1
Chain N0
60S ribosomal protein L20-A
Chain N1
60S ribosomal protein L21-A

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