IL_8BPO_006
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_006 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.0875
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BPO|1|A1|C|81
8BPO|1|A1|U|82
8BPO|1|A1|C|83
8BPO|1|A1|A|84
8BPO|1|A1|G|85
8BPO|1|A1|U|86
8BPO|1|A1|A|87
8BPO|1|A1|A|88
*
8BPO|1|A1|U|96
8BPO|1|A1|G|97
8BPO|1|A1|A|98
8BPO|1|A1|A|99
8BPO|1|A1|C|100
8BPO|1|A1|A|101
8BPO|1|A1|G|102
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain K2
- 60S ribosomal protein L13
- Chain M2
- Ribosomal protein L15
- Chain P2
- Ribosomal protein L18
- Chain Z2
- 60S ribosomal protein L27a
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