IL_8BPO_010

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_010 not in the Motif Atlas

Geometric match to IL_4WF9_020

Geometric discrepancy: 0.1789

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8BPO|1|A1|C|128
8BPO|1|A1|C|129
8BPO|1|A1|C|130
*
8BPO|1|A1|G|138
8BPO|1|A1|G|139
8BPO|1|A1|G|140

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain M2

Ribosomal protein L15

Chain W2

Ribosomal_L23eN domain-containing protein

Chain g2

60S ribosomal protein L35