IL_8BPO_013
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCGG*CGGCG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_013 not in the Motif Atlas
- Geometric match to IL_8CRE_101
- Geometric discrepancy: 0.39
- The information below is about IL_8CRE_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68909.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BPO|1|A1|C|180
8BPO|1|A1|C|181
8BPO|1|A1|G|182
8BPO|1|A1|G|189
*
8BPO|1|A1|C|252
8BPO|1|A1|G|253
8BPO|1|A1|G|254
8BPO|1|A1|C|255
8BPO|1|A1|G|256
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain K2
- 60S ribosomal protein L13
- Chain g2
- 60S ribosomal protein L35
- Chain i2
- Ribosomal protein L37
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