IL_8BPO_027

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8BPO|1|A1|G|666, 8BPO|1|A1|A|667, 8BPO|1|A1|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_027 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1557

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8BPO|1|A1|G|487
8BPO|1|A1|G|488
*
8BPO|1|A1|C|665
8BPO|1|A1|G|666
8BPO|1|A1|A|667
8BPO|1|A1|C|668
8BPO|1|A1|C|669

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C2

60S ribosomal protein L4

Chain P2

Ribosomal protein L18

Chain p2

60S ribosomal protein L28