IL_8BPO_043

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8BPO|1|A1|C|1214, 8BPO|1|A1|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_043 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2708

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8BPO|1|A1|C|1082
8BPO|1|A1|U|1083
8BPO|1|A1|C|1084
*
8BPO|1|A1|G|1213
8BPO|1|A1|C|1214
8BPO|1|A1|C|1215
8BPO|1|A1|C|1216
8BPO|1|A1|G|1217

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain F2

60S ribosomal protein L7

Chain a2

60S ribosomal protein L29