IL_8BPO_055
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8BPO|1|A1|A|1650, 8BPO|1|A1|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_055 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0692
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BPO|1|A1|G|1522
8BPO|1|A1|A|1523
8BPO|1|A1|A|1524
8BPO|1|A1|A|1525
8BPO|1|A1|G|1526
*
8BPO|1|A1|C|1648
8BPO|1|A1|U|1649
8BPO|1|A1|A|1650
8BPO|1|A1|G|1651
8BPO|1|A1|U|1652
8BPO|1|A1|A|1653
8BPO|1|A1|G|1654
8BPO|1|A1|C|1655
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 60S ribosomal protein L4
- Chain K2
- 60S ribosomal protein L13
- Chain M2
- Ribosomal protein L15
- Chain Z2
- 60S ribosomal protein L27a
- Chain i2
- Ribosomal protein L37
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