IL_8BPO_067
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8BPO|1|A1|G|1741, 8BPO|1|A1|A|1742
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_067 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0893
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8BPO|1|A1|G|1739
8BPO|1|A1|C|1740
8BPO|1|A1|G|1741
8BPO|1|A1|A|1742
8BPO|1|A1|A|1743
8BPO|1|A1|U|1744
*
8BPO|1|A1|A|1786
8BPO|1|A1|A|1787
8BPO|1|A1|A|1788
8BPO|1|A1|C|1789
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain B1
- 5S ribosomal RNA; 5S rRNA
- Chain D2
- Ribosomal_L18_c domain-containing protein
- Chain I2
- Ribosomal protein L10
- Chain S2
- 60S ribosomal protein L21
Coloring options: