IL_8BPO_076
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 8BPO|1|A1|U|2070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_076 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.096
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8BPO|1|A1|U|1905
8BPO|1|A1|U|1906
8BPO|1|A1|A|1907
8BPO|1|A1|A|1908
8BPO|1|A1|G|1909
*
8BPO|1|A1|C|2067
8BPO|1|A1|C|2068
8BPO|1|A1|A|2069
8BPO|1|A1|U|2070
8BPO|1|A1|A|2071
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain B1
- 5S ribosomal RNA; 5S rRNA
- Chain F2
- 60S ribosomal protein L7
- Chain P2
- Ribosomal protein L18
- Chain d2
- Ribosomal protein L32
- Chain e2
- 60S ribosomal protein L35a
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