IL_8BPO_088
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8BPO|1|A1|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_088 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.1308
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8BPO|1|A1|C|2302
8BPO|1|A1|C|2303
8BPO|1|A1|U|2304
8BPO|1|A1|U|2305
8BPO|1|A1|G|2306
8BPO|1|A1|A|2307
8BPO|1|A1|A|2308
8BPO|1|A1|G|2309
*
8BPO|1|A1|U|2329
8BPO|1|A1|G|2330
8BPO|1|A1|G|2331
8BPO|1|A1|A|2332
8BPO|1|A1|G|2333
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C2
- 60S ribosomal protein L4
- Chain X2
- Ribosomal protein L26
- Chain d2
- Ribosomal protein L32
- Chain t2
- Tetratricopeptide repeat protein 5
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