IL_8BPO_093

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_093 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2699

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8BPO|1|A1|A|2477
8BPO|1|A1|C|2478
8BPO|1|A1|G|2479
*
8BPO|1|A1|C|2499
8BPO|1|A1|U|2500

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C1

5.8S ribosomal RNA; 5.8S rRNA

Chain W2

Ribosomal_L23eN domain-containing protein