IL_8BPO_107

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8BPO|1|A1|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_107 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0821

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8BPO|1|A1|A|2850
8BPO|1|A1|G|2851
8BPO|1|A1|U|2852
8BPO|1|A1|C|2853
8BPO|1|A1|G|2854
8BPO|1|A1|G|2855
*
8BPO|1|A1|C|3837
8BPO|1|A1|U|3838
8BPO|1|A1|G|3839
8BPO|1|A1|U|3840

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain U2

60S ribosomal protein L23