IL_8BPO_108

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8BPO|1|A1|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_108 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0818

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8BPO|1|A1|C|2867
8BPO|1|A1|G|2868
8BPO|1|A1|U|2869
8BPO|1|A1|A|2870
8BPO|1|A1|A|2871
8BPO|1|A1|C|2872
*
8BPO|1|A1|G|2877
8BPO|1|A1|G|2878
8BPO|1|A1|A|2879
8BPO|1|A1|U|2880
8BPO|1|A1|A|2881
8BPO|1|A1|A|2882
8BPO|1|A1|G|2883

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L41

Chain o2

60S ribosomal protein L37a