IL_8BPO_117
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_117 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1538
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BPO|1|A1|U|3715
8BPO|1|A1|C|3716
8BPO|1|A1|A|3717
8BPO|1|A1|A|3718
8BPO|1|A1|A|3719
8BPO|1|A1|G|3720
8BPO|1|A1|U|3721
*
8BPO|1|A1|A|3732
8BPO|1|A1|A|3733
8BPO|1|A1|U|3734
8BPO|1|A1|G|3735
8BPO|1|A1|A|3736
8BPO|1|A1|A|3737
8BPO|1|A1|G|3738
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L8
- Chain h2
- 60S ribosomal protein L36
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