IL_8BPO_119

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8BPO|1|A1|A|3785, 8BPO|1|A1|C|3791, 8BPO|1|A1|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_119 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0987

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BPO|1|A1|C|3781
8BPO|1|A1|C|3782
8BPO|1|A1|A|3783
8BPO|1|A1|A|3784
8BPO|1|A1|A|3785
8BPO|1|A1|U|3786
8BPO|1|A1|G|3787
8BPO|1|A1|C|3788
8BPO|1|A1|C|3789
8BPO|1|A1|U|3790
8BPO|1|A1|C|3791
8BPO|1|A1|G|3792
*
8BPO|1|A1|C|3808
8BPO|1|A1|G|3809
8BPO|1|A1|C|3810
8BPO|1|A1|G|3811

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L41