IL_8BPO_140

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8BPO|1|A1|G|4522, 8BPO|1|A1|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_140 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1075

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8BPO|1|A1|C|4456
8BPO|1|A1|U|4457
8BPO|1|A1|C|4458
*
8BPO|1|A1|G|4520
8BPO|1|A1|U|4521
8BPO|1|A1|G|4522
8BPO|1|A1|A|4523
8BPO|1|A1|G|4524

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain U2

60S ribosomal protein L23