IL_8BPO_151

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

8BPO|1|A1|U|4634, 8BPO|1|A1|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_151 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.264

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8BPO|1|A1|U|4632
8BPO|1|A1|G|4633
8BPO|1|A1|U|4634
8BPO|1|A1|A|4635
8BPO|1|A1|U|4636
8BPO|1|A1|G|4637
*
8BPO|1|A1|C|4662
8BPO|1|A1|G|4663
8BPO|1|A1|A|4664
8BPO|1|A1|A|4665
8BPO|1|A1|G|4666

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain V2

Ribosomal protein L24

Chain c2

60S ribosomal protein L31