IL_8BPO_156

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

8BPO|1|A1|C|4757, 8BPO|1|A1|U|4758, 8BPO|1|A1|A|4764, 8BPO|1|A1|G|4870, 8BPO|1|A1|C|4871, 8BPO|1|A1|G|4873, 8BPO|1|A1|A|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_156 not in the Motif Atlas

Homologous match to IL_8P9A_352

Geometric discrepancy: 0.5557

The information below is about IL_8P9A_352

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28855.1

Basepair signature

cWW-L-R-L-cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8BPO|1|A1|C|4756
8BPO|1|A1|C|4757
8BPO|1|A1|U|4758
8BPO|1|A1|C|4759
8BPO|1|A1|G|4760
8BPO|1|A1|G|4761
8BPO|1|A1|A|4762
8BPO|1|A1|U|4763
8BPO|1|A1|A|4764
8BPO|1|A1|G|4765
8BPO|1|A1|C|4766
*
8BPO|1|A1|G|4868
8BPO|1|A1|U|4869
8BPO|1|A1|G|4870
8BPO|1|A1|C|4871
8BPO|1|A1|G|4872
8BPO|1|A1|G|4873
8BPO|1|A1|A|4874
8BPO|1|A1|G|4875
8BPO|1|A1|A|4876
8BPO|1|A1|G|4877

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain E2

60S ribosomal protein L6

Chain H2

60S ribosomal protein L9

Chain L2

60S ribosomal protein L14

Chain N2

60S ribosomal protein L13a

Chain R2

60S ribosomal protein L18a