IL_8BPO_157

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_157 not in the Motif Atlas

Geometric match to IL_2O3Y_003

Geometric discrepancy: 0.2364

The information below is about IL_2O3Y_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

8BPO|1|A1|G|4769
8BPO|1|A1|U|4770
8BPO|1|A1|C|4771
8BPO|1|A1|C|4772
8BPO|1|A1|C|4773
*
8BPO|1|A1|G|4862
8BPO|1|A1|G|4863
8BPO|1|A1|U|4864
8BPO|1|A1|C|4865

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain H2

60S ribosomal protein L9

Chain N2

60S ribosomal protein L13a