IL_8BPO_158

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_158 not in the Motif Atlas

Geometric match to IL_4K27_002

Geometric discrepancy: 0.2361

The information below is about IL_4K27_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8BPO|1|A1|U|4885
8BPO|1|A1|C|4886
8BPO|1|A1|C|4887
8BPO|1|A1|C|4888
*
8BPO|1|A1|G|4931
8BPO|1|A1|U|4932
8BPO|1|A1|C|4933
8BPO|1|A1|A|4934

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain E2

60S ribosomal protein L6

Chain L2

60S ribosomal protein L14