IL_8BPO_171

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_171 not in the Motif Atlas

Homologous match to IL_7RQB_114

Geometric discrepancy: 0.1453

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

8BPO|1|B1|A|32
8BPO|1|B1|U|33
8BPO|1|B1|C|34
8BPO|1|B1|U|35
8BPO|1|B1|C|36
*
8BPO|1|B1|G|41
8BPO|1|B1|A|42
8BPO|1|B1|U|43
8BPO|1|B1|C|44
8BPO|1|B1|U|45

Current chains

Chain B1

5S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain D2

Ribosomal_L18_c domain-containing protein

Chain J2

60S ribosomal protein L11