IL_8BPO_176

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAU*AAAUGUG

Length

12 nucleotides

Bulged bases

8BPO|1|A1|G|119, 8BPO|1|A1|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|C|118
8BPO|1|A1|G|119
8BPO|1|A1|A|120
8BPO|1|A1|A|121
8BPO|1|A1|U|122
*
8BPO|1|A1|A|147
8BPO|1|A1|A|148
8BPO|1|A1|A|149
8BPO|1|A1|U|150
8BPO|1|A1|G|151
8BPO|1|A1|U|152
8BPO|1|A1|G|153

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C1

5.8S ribosomal RNA; 5.8S rRNA

Chain G2

60S ribosomal protein L7a

Chain M2

Ribosomal protein L15

Chain g2

60S ribosomal protein L35