IL_8BPO_185

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_185 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1758

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8BPO|1|A1|A|5014
8BPO|1|A1|G|5015
8BPO|1|A1|A|5016
8BPO|1|A1|G|5017
*
8BPO|1|A1|C|5032
8BPO|1|A1|G|5033
8BPO|1|A1|A|5034
8BPO|1|A1|U|5035

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain Q2

60S ribosomal protein L19