IL_8BQD_041

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

8BQD|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_041 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.2306

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8BQD|1|2|G|867
8BQD|1|2|G|868
8BQD|1|2|A|869
*
8BQD|1|2|U|958
8BQD|1|2|U|959
8BQD|1|2|U|960
8BQD|1|2|U|961

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S13

Chain f

40S ribosomal protein S27-A