IL_8BQD_045

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8BQD|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_045 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2844

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8BQD|1|2|U|893
8BQD|1|2|U|894
8BQD|1|2|G|895
8BQD|1|2|U|896
8BQD|1|2|C|897
8BQD|1|2|A|898
8BQD|1|2|G|899
*
8BQD|1|2|C|910
8BQD|1|2|U|911
8BQD|1|2|U|912
8BQD|1|2|G|913
8BQD|1|2|G|914
8BQD|1|2|A|915
8BQD|1|2|U|916
8BQD|1|2|U|917
8BQD|1|2|U|918
8BQD|1|2|A|919

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-B