IL_8BQD_104
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|398, 8BQD|1|BQ|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_104 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.1091
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8BQD|1|BQ|G|376
8BQD|1|BQ|A|377
8BQD|1|BQ|A|378
8BQD|1|BQ|C|379
*
8BQD|1|BQ|G|390
8BQD|1|BQ|A|391
8BQD|1|BQ|G|392
8BQD|1|BQ|U|393
8BQD|1|BQ|G|394
8BQD|1|BQ|A|395
8BQD|1|BQ|A|396
8BQD|1|BQ|A|397
8BQD|1|BQ|A|398
8BQD|1|BQ|A|399
8BQD|1|BQ|G|400
8BQD|1|BQ|U|401
8BQD|1|BQ|A|402
8BQD|1|BQ|C|403
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain AL
- 60S ribosomal protein L39
- Chain AX
- 60S ribosomal protein L17-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: