IL_8BQD_106
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_106 not in the Motif Atlas
- Homologous match to IL_5TBW_016
- Geometric discrepancy: 0.0844
- The information below is about IL_5TBW_016
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8BQD|1|BQ|U|429
8BQD|1|BQ|U|430
8BQD|1|BQ|U|431
*
8BQD|1|BQ|A|628
8BQD|1|BQ|U|629
8BQD|1|BQ|A|630
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AU
- 60S ribosomal protein L16-A
- Chain BG
- RPL32 isoform 1
- Chain BK
- 60S ribosomal protein L33-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: