IL_8BQD_107
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG
- Length
- 34 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|440
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BQD|1|BQ|C|435
8BQD|1|BQ|A|436
8BQD|1|BQ|G|437
8BQD|1|BQ|A|438
8BQD|1|BQ|C|439
8BQD|1|BQ|A|440
8BQD|1|BQ|U|441
8BQD|1|BQ|G|442
8BQD|1|BQ|G|443
8BQD|1|BQ|U|444
8BQD|1|BQ|G|445
8BQD|1|BQ|U|446
8BQD|1|BQ|U|447
8BQD|1|BQ|U|448
8BQD|1|BQ|U|449
8BQD|1|BQ|G|450
8BQD|1|BQ|U|451
8BQD|1|BQ|A|486
8BQD|1|BQ|U|487
8BQD|1|BQ|U|488
8BQD|1|BQ|U|489
8BQD|1|BQ|C|490
8BQD|1|BQ|A|491
8BQD|1|BQ|C|492
8BQD|1|BQ|U|493
8BQD|1|BQ|G|494
8BQD|1|BQ|G|495
*
8BQD|1|BQ|C|618
8BQD|1|BQ|A|619
8BQD|1|BQ|U|620
8BQD|1|BQ|A|621
8BQD|1|BQ|A|622
8BQD|1|BQ|U|623
8BQD|1|BQ|G|624
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AX
- 60S ribosomal protein L17-A
- Chain BG
- RPL32 isoform 1
- Chain BK
- 60S ribosomal protein L33-A
- Chain BM
- 60S ribosomal protein L6-B
Coloring options: