IL_8BQD_108

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*CAG

Length

5 nucleotides

Bulged bases

8BQD|1|BQ|A|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_108 not in the Motif Atlas

Homologous match to IL_8C3A_020

Geometric discrepancy: 0.117

The information below is about IL_8C3A_020

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BQD|1|BQ|U|512
8BQD|1|BQ|G|513
*
8BQD|1|BQ|C|577
8BQD|1|BQ|A|578
8BQD|1|BQ|G|579

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BE

RPL4A isoform 1

Chain BO

60S ribosomal protein L7-A