IL_8BQD_109
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUAAUC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|519, 8BQD|1|BQ|U|520
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BQD|1|BQ|G|517
8BQD|1|BQ|G|518
8BQD|1|BQ|A|519
8BQD|1|BQ|U|520
8BQD|1|BQ|A|521
8BQD|1|BQ|A|522
8BQD|1|BQ|U|524
8BQD|1|BQ|C|525
*
8BQD|1|BQ|G|567
8BQD|1|BQ|G|568
8BQD|1|BQ|A|569
8BQD|1|BQ|A|570
8BQD|1|BQ|U|571
8BQD|1|BQ|A|572
8BQD|1|BQ|C|573
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AM
- 60S ribosomal protein L14-A
- Chain BE
- RPL4A isoform 1
- Chain BH
- 60S ribosomal protein L20-A
- Chain BO
- 60S ribosomal protein L7-A
Coloring options: