3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGAUAAUC*GGAAUAC
Length
15 nucleotides
Bulged bases
8BQD|1|BQ|A|519, 8BQD|1|BQ|U|520
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BQD|1|BQ|G|517
8BQD|1|BQ|G|518
8BQD|1|BQ|A|519
8BQD|1|BQ|U|520
8BQD|1|BQ|A|521
8BQD|1|BQ|A|522
8BQD|1|BQ|U|524
8BQD|1|BQ|C|525
*
8BQD|1|BQ|G|567
8BQD|1|BQ|G|568
8BQD|1|BQ|A|569
8BQD|1|BQ|A|570
8BQD|1|BQ|U|571
8BQD|1|BQ|A|572
8BQD|1|BQ|C|573

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AM
60S ribosomal protein L14-A
Chain BE
RPL4A isoform 1
Chain BH
60S ribosomal protein L20-A
Chain BO
60S ribosomal protein L7-A

Coloring options:

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