IL_8BQD_116

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_116 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1604

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BQD|1|BQ|C|758
8BQD|1|BQ|U|759
8BQD|1|BQ|G|760
8BQD|1|BQ|A|761
8BQD|1|BQ|U|762
8BQD|1|BQ|G|763
*
8BQD|1|BQ|C|768
8BQD|1|BQ|G|769
8BQD|1|BQ|G|770
8BQD|1|BQ|A|771
8BQD|1|BQ|U|772
8BQD|1|BQ|G|773

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A

Chain AP

60S ribosomal protein L42-A

Chain AR

60S ribosomal protein L28