IL_8BQD_117
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCGAAAG*CUAGUAGUG
- Length
- 16 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|933, 8BQD|1|BQ|G|937
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BQD|1|BQ|C|803
8BQD|1|BQ|C|804
8BQD|1|BQ|G|805
8BQD|1|BQ|A|806
8BQD|1|BQ|A|807
8BQD|1|BQ|A|808
8BQD|1|BQ|G|809
*
8BQD|1|BQ|C|931
8BQD|1|BQ|U|932
8BQD|1|BQ|A|933
8BQD|1|BQ|G|934
8BQD|1|BQ|U|935
8BQD|1|BQ|A|936
8BQD|1|BQ|G|937
8BQD|1|BQ|U|939
8BQD|1|BQ|G|940
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain BE
- RPL4A isoform 1
Coloring options: