IL_8BQD_131

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_131 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.1714

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BQD|1|BQ|A|1009
8BQD|1|BQ|G|1010
8BQD|1|BQ|A|1011
*
8BQD|1|BQ|U|1039
8BQD|1|BQ|A|1040
8BQD|1|BQ|U|1041

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BD

RPL10 isoform 1

Chain BI

RPL5 isoform 1