IL_8BQD_132

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

8BQD|1|BQ|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_132 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3918

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8BQD|1|BQ|U|1014
8BQD|1|BQ|U|1015
8BQD|1|BQ|C|1016
8BQD|1|BQ|C|1017
8BQD|1|BQ|G|1018
*
8BQD|1|BQ|U|1034
8BQD|1|BQ|G|1035
8BQD|1|BQ|A|1036

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

RPL11B isoform 1

Chain BD

RPL10 isoform 1