IL_8BQD_144

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8BQD|1|BQ|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_144 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.2604

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8BQD|1|BQ|G|1262
8BQD|1|BQ|A|1263
8BQD|1|BQ|G|1264
8BQD|1|BQ|U|1265
8BQD|1|BQ|G|1266
*
8BQD|1|BQ|C|1275
8BQD|1|BQ|U|1276
8BQD|1|BQ|C|1277

Current chains

Chain BQ

25S rRNA

Nearby chains