IL_8BQD_169

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_169 not in the Motif Atlas

Geometric match to IL_7RQB_005

Geometric discrepancy: 0.3668

The information below is about IL_7RQB_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

8BQD|1|BQ|C|1951
8BQD|1|BQ|G|1952
8BQD|1|BQ|G|1953
*
8BQD|1|BQ|C|2094
8BQD|1|BQ|G|2095

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A