IL_8BQD_181

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8BQD|1|BQ|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQD|1|BQ|G|2206
8BQD|1|BQ|A|2207
8BQD|1|BQ|A|2208
8BQD|1|BQ|U|2209
8BQD|1|BQ|G|2210
*
8BQD|1|BQ|C|2235
8BQD|1|BQ|G|2236
8BQD|1|BQ|C|2237

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain BT

60S ribosomal protein L1-A

Chain Q

40S ribosomal protein S1-A