IL_8BQD_204

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8BQD|1|BQ|A|2941, 8BQD|1|BQ|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_204 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0664

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8BQD|1|BQ|C|2881
8BQD|1|BQ|U|2882
*
8BQD|1|BQ|A|2940
8BQD|1|BQ|A|2941
8BQD|1|BQ|C|2942
8BQD|1|BQ|G|2943

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3