IL_8BQD_222

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

8BQD|1|BQ|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_222 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.1209

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8BQD|1|BQ|C|3225
8BQD|1|BQ|A|3226
8BQD|1|BQ|A|3227
8BQD|1|BQ|C|3228
8BQD|1|BQ|G|3229
*
8BQD|1|BQ|U|3258
8BQD|1|BQ|U|3259
8BQD|1|BQ|G|3260

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain BK

60S ribosomal protein L33-A

Chain BM

60S ribosomal protein L6-B