IL_8BQD_235

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AC*GUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_235 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.261

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

8BQD|1|BR|A|27
8BQD|1|BR|C|28
*
8BQD|1|BR|G|52
8BQD|1|BR|U|53
8BQD|1|BR|U|54

Current chains

Chain BR

5S rRNA

Nearby chains

Chain AG

RPL11B isoform 1

Chain BI

RPL5 isoform 1