IL_8BQD_238

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUCCC*GAUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_238 not in the Motif Atlas

Homologous match to IL_5TBW_376

Geometric discrepancy: 0.2085

The information below is about IL_5TBW_376

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.9

Basepair signature

cWW-cSH-cWS-tSW-L-R-cWW-R

Number of instances in this motif group

9

Unit IDs

8BQD|1|BR|U|32
8BQD|1|BR|U|33
8BQD|1|BR|C|34
8BQD|1|BR|C|35
8BQD|1|BR|C|36
*
8BQD|1|BR|G|41
8BQD|1|BR|A|42
8BQD|1|BR|U|43
8BQD|1|BR|C|44
8BQD|1|BR|A|45

Current chains

Chain BR

5S rRNA

Nearby chains

Chain AG

RPL11B isoform 1

Chain BI

RPL5 isoform 1

Chain BQ

Large subunit ribosomal RNA; LSU rRNA