IL_8BQX_010

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_010 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1602

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8BQX|1|2|U|117
8BQX|1|2|U|118
8BQX|1|2|A|119
8BQX|1|2|U|120
8BQX|1|2|U|121
8BQX|1|2|U|122
*
8BQX|1|2|A|295
8BQX|1|2|U|296
8BQX|1|2|U|297
8BQX|1|2|C|298
8BQX|1|2|A|299

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain V

40S ribosomal protein S8-A