IL_8BQX_020

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_020 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.4947

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

8BQX|1|2|U|318
8BQX|1|2|U|319
8BQX|1|2|U|320
8BQX|1|2|C|321
8BQX|1|2|G|322
8BQX|1|2|A|323
*
8BQX|1|2|U|345
8BQX|1|2|G|346

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A