IL_8BQX_045

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8BQX|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_045 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2844

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8BQX|1|2|U|893
8BQX|1|2|U|894
8BQX|1|2|G|895
8BQX|1|2|U|896
8BQX|1|2|C|897
8BQX|1|2|A|898
8BQX|1|2|G|899
*
8BQX|1|2|C|910
8BQX|1|2|U|911
8BQX|1|2|U|912
8BQX|1|2|G|913
8BQX|1|2|G|914
8BQX|1|2|A|915
8BQX|1|2|U|916
8BQX|1|2|U|917
8BQX|1|2|U|918
8BQX|1|2|A|919

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-B