IL_8BQX_074

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_074 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.177

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BQX|1|2|G|1540
8BQX|1|2|G|1541
8BQX|1|2|G|1542
8BQX|1|2|A|1543
8BQX|1|2|U|1544
8BQX|1|2|A|1545
*
8BQX|1|2|U|1566
8BQX|1|2|U|1567
8BQX|1|2|C|1568
8BQX|1|2|A|1569
8BQX|1|2|A|1570
8BQX|1|2|C|1571

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A

Chain K

40S ribosomal protein S25-A