IL_8BQX_092

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8BQX|1|BQ|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_092 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1187

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BQX|1|BQ|A|13
8BQX|1|BQ|U|14
8BQX|1|BQ|C|15
*
8BQX|1|BS|G|144
8BQX|1|BS|U|145

Current chains

Chain BQ

25S rRNA

Chain BS

5.8S rRNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AH

60S ribosomal protein L25

Chain AQ

60S ribosomal protein L15-A