IL_8BQX_100

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_100 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1787

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8BQX|1|BQ|G|171
8BQX|1|BQ|G|172
8BQX|1|BQ|G|173
*
8BQX|1|BQ|U|245
8BQX|1|BQ|U|246
8BQX|1|BQ|C|247

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A

Chain BP

60S ribosomal protein L35-A